PanVizGenerator

PanVizGenerator: Visualization of Functionally Annotated Pangenomes

PanVizGenerator generates interactive visualizations of functionally annotated pangenomes and preprocesses gene group data for comparative genomic analysis.

Key Features:

• Interactive Pangenome Visualization: Visualizes gene group classifications across multiple pangenome subsets to support comparative analyses.
• Gene Ontology Navigation: Integrates Gene Ontology annotations to enable structured exploration of gene groups within pangenomes.
• Visual Querying of Gene Groups: Supports complex queries on gene group data within the pangenome context.

Scientific Applications:

• Comparative Genomics: Compares individual genomes against pangenomes to assess gene group distribution and variation.
• Functional Annotation Analysis: Analyzes gene groups using Gene Ontology-based functional classifications.
• Hypothesis Testing: Evaluates gene group patterns through targeted queries across pangenome datasets.

Methodology:

Implements visualization components in JavaScript and provides an R package for preprocessing and generating visualizations from diverse gene group and pangenome data formats.