PASMet

PASMet predicts, constructs, simulates, and analyzes metabolic network models using statistical and mathematical methods.


Key Features:

  • Metabolic Pathway Prediction: Predicts probable metabolic pathways and associated regulatory mechanisms using integrated statistical and mathematical approaches.
  • Model Construction and Simulation: Enables construction of mathematical models of metabolic dynamics from user-defined equations or CSV data and performs dynamic simulations and system-level analyses.

Scientific Applications:

  • Metabolic Network Dynamics Analysis: Investigates regulatory mechanisms and system responses of metabolic networks under varying conditions through computational modeling and simulation.

Methodology:

PASMet implements a four-step framework comprising pathway prediction, mathematical model construction, dynamic simulation, and quantitative analysis of metabolic systems using statistical and mathematical techniques.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Sriyudthsak K, Mejia RF, Arita M, Hirai MY. PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems. Nucleic Acids Research. 2016;44(W1):W205-W211. doi:10.1093/nar/gkw415. PMID:27174940. PMCID:PMC4987946.

Documentation

Links