PathML
PathML provides scalable computational analysis of digital pathology imaging datasets to support cancer research by applying machine learning and standardized processing to derive quantitative insights.
Key Features:
- Scalability: Handles large-scale digital pathology imaging datasets enabling efficient processing of extensive datasets in cancer research.
- Standardization: Provides a consistent analysis framework to support reproducibility and comparability across studies.
- Machine learning and artificial intelligence: Applies machine learning and AI techniques to analyze imaging data and uncover patterns and correlations.
Scientific Applications:
- Cancer research: Analysis of digital pathology imaging data to derive insights that inform scientific understanding and clinical care.
- Computational pathology: Standardized processing and quantitative analysis across diverse digital pathology use cases.
- Pattern discovery in imaging datasets: Use of machine learning and artificial intelligence to identify patterns and correlations within complex, data-rich imaging environments.
Methodology:
Computational methods explicitly include scalable processing of large imaging datasets and application of machine learning and artificial intelligence techniques within a standardized analysis framework.
Topics
Details
- License:
- GPL-2.0
- Maturity:
- Mature
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, R
- Added:
- 1/10/2022
- Last Updated:
- 2/8/2023
Operations
Publications
Rosenthal J, Carelli R, Omar M, Brundage D, Halbert E, Nyman J, Hari SN, Van Allen EM, Marchionni L, Umeton R, Loda M. Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology. Molecular Cancer Research. 2021;20(2):202-206. doi:10.1158/1541-7786.mcr-21-0665. PMID:34880124. PMCID:PMC9127877.
Documentation
Downloads
- Container filehttps://hub.docker.com/r/pathml/pathmldocker pull pathml/pathml