pathway-subtyping

Disease-agnostic Python framework for discovering molecular subtypes using pathway-level analysis and Gaussian mixture model clustering with built-in validation gates

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Topics

Biosciences Computational biology Machine learning Omics

Details

License:: MIT
Maturity:: Mature
Cost:: Free of charge
Tool Type:: command-line tool, library
Operating Systems:: Linux, Mac, Windows
Programming Languages:: Python
Added:: 3/4/2026
Last Updated:: 4/19/2026

Operations

Publications

DOI: 10.21203/rs.3.rs-8913089/v1

Documentation

User manual

https://codeberg.org/pathways/pathway-subtyping-framework/src/branch/main/docs

Downloads

Software package
Version: 0.3.1
https://pypi.org/project/pathway-subtyping/
pip install pathway-subtyping Or with all extras: pip install pathway-subtyping[viz,graph]

Links

Other

https://codeberg.org/pathways/pathway-subtyping-framework/src/branch/main/docs

(Documentation)

Software catalogue

https://pypi.org/project/pathway-subtyping/

(Python Library Repository)

Other

https://codeberg.org/pathways/pathway-subtyping-framework

(Source code repository)

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