PCAj
PCAj (Principal component analysis for Japanese)predicts population structure of Japanese samples using genome-wide SNP genotypes. It creates a 2D scatterplot of predicted principal components based on the probabilistic PCA.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Java
- Added:
- 12/18/2017
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Structure prediction
Other operations do not define inputs or outputs.
Publications
Kumasaka N, Yamaguchi-Kabata Y, Takahashi A, Kubo M, Nakamura Y, Kamatani N. Establishment of a standardized system to perform population structure analyses with limited sample size or with different sets of SNP genotypes. Journal of Human Genetics. 2010;55(8):525-533. doi:10.1038/jhg.2010.63.
DOI: 10.1038/jhg.2010.63