PDBL

PDBL enhances histopathological tissue classification to support semantic segmentation of whole-slide images and reduce reliance on pixel-level dense annotations.


Key Features:

  • Backbone integration without re-training: PDBL augments the outputs of a well-trained classification backbone without requiring re-training.
  • Multi-resolution image pyramid: For each image patch, PDBL constructs a multi-resolution image pyramid to capture pyramidal contextual information across scales.
  • Deep-Broad block (DB-block): At each pyramid level, PDBL applies a DB-block to extract multi-scale deep and broad features.
  • Classifier evaluations: PDBL has been integrated and evaluated with ShuffleNetV2, EfficientNetb0, and ResNet50.
  • Reduced annotation requirement: PDBL reduces reliance on pixel-level dense annotations by improving tissue-level classification performance.

Scientific Applications:

  • Limited-data classification: PDBL improves tissue-level classification performance when training data is limited.
  • Dataset evaluations: Experimental results on the Kather Multiclass Dataset and the LC25000 Dataset show consistent performance gains across CNN backbones, with pronounced improvements for lightweight models trained on less than 10% of samples.

Methodology:

For each image patch PDBL constructs a multi-resolution image pyramid; at each pyramid level it applies a Deep-Broad block (DB-block) to extract multi-scale deep-broad features, and the extracted features are combined with an existing well-trained classification backbone without re-training.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
7/6/2022
Last Updated:
11/24/2024

Operations

Publications

Lin J, Han G, Pan X, Liu Z, Chen H, Li D, Jia X, Shi Z, Wang Z, Cui Y, Li H, Liang C, Liang L, Wang Y, Han C. PDBL: Improving Histopathological Tissue Classification With Plug-and-Play Pyramidal Deep-Broad Learning. IEEE Transactions on Medical Imaging. 2022;41(9):2252-2262. doi:10.1109/tmi.2022.3161787. PMID:35320093.

PMID: 35320093
Funding: - Key Research and Development Program of Guangdong Province, China: 2021B0101420006 - National Key Research and Development Program of China: 2021YFF1201003, 2021YFF1201004 - National Science Fund for Distinguished Young Scholars: 81925023 - National Natural Science Foundation of China: 62002082, 62102103, 81901704, 82001789, 82071892, 82102034 - High-level Hospital Construction Project of Guangdong Provincial People's Hospital: DFJH201805, DFJHBF202105 - Guangzhou Research and Development Plan in Key Areas: 202007040001