PhageBox
PhageBox integrates temperature control and electromagnetic manipulation into digital microfluidic biochips to automate DNA manipulation and viral testing workflows.
Key Features:
- Digital microfluidic extension: Expands droplet-based biochips with additional functional modules for biochemical processing.
- Temperature control module: Provides precise thermal regulation with a validated precision of ±0.2°C for biochemical reactions.
- Electromagnet system: Generates a magnetic force of 15 milliTesla to enable magnetic bead immobilization for sample handling and separation.
- Magnetic bead support: Enables immobilization and manipulation of magnetic beads for sample capture and separation workflows.
- Embedded bio-protocol programming: Implements an embedded software model for customizing and automating laboratory protocols.
Scientific Applications:
- Polymerase chain reaction (PCR): Provides a standardized framework to perform and control PCR processes on microfluidic biochips.
- T7 bacteriophage restriction enzyme digestion: Enables precise restriction enzyme digestion workflows for T7 bacteriophage samples.
- Concentration of ϕX174 RF genomic DNA: Supports concentration and downstream analysis of ϕX174 RF genomic DNA.
- Magnetic bead–based sample handling: Facilitates magnetic bead immobilization for sample handling and separation in molecular protocols.
- Bacteriophage research and virology protocols: Supports experimental protocols used in bacteriophage research and related viral testing applications.
Methodology:
Embedded software implements a model for bio-protocol programming to automate and customize laboratory protocols.
Topics
Details
- License:
- CC-BY-SA-4.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool, workflow
- Programming Languages:
- C++, Python
- Added:
- 1/2/2024
- Last Updated:
- 1/2/2024
Operations
Publications
Albin D, Buecherl L, Kochavi E, Niehaus E, Novack S, Uragoda S, Myers CJ, Alistar M. PhageBox: An Open Source Digital Microfluidic Extension With Applications for Phage Discovery. IEEE Transactions on Biomedical Engineering. 2024;71(1):217-226. doi:10.1109/tbme.2023.3295418. PMID:37450356.
PMID: 37450356
Funding: - National Science Foundation Graduate Research Fellowship Program: DGE 2040434
- National Science Foundation: 1856740