PhenoPlot

PhenoPlot transforms high-dimensional, image-derived feature vectors from high-content analysis into glyph-based visual representations to support interpretation of cellular phenotypes.


Key Features:

  • Glyph-based visualization: Converts multi-faceted feature vectors into compact glyphs that encode multiple image-derived measurements.
  • High-dimensional data handling: Processes high-dimensional image-based and high-content analysis datasets derived from microscopy.
  • Cellular phenotype representation: Encodes quantitative descriptors of cellular phenotypes as visual elements within glyphs.
  • Quantitative high-content imaging support: Represents quantitative measurements from high-content imaging experiments within the visualization.
  • Hypothesis generation and interpretation: Facilitates data exploration to aid hypothesis generation, interpretation of results, and communication of findings.

Scientific Applications:

  • Phenotypic exploration: Visual exploration of complex, image-derived cellular phenotypes encoded as multi-dimensional feature vectors.
  • Breast cancer cell phenotype analysis: Visualization and comparison of complex breast cancer cell phenotypes using quantitative high-content imaging data.
  • Data interpretation and communication: Communicating multi-parametric imaging results to support interpretation and collaborative analysis.

Methodology:

Transforms high-dimensional, image-derived feature vectors from high-content analysis into simplified glyph-based graphical representations.

Topics

Collections

Details

License:
GPL-2.0
Cost:
Free of charge (with restrictions)
Tool Type:
library
Operating Systems:
Windows, Linux, Mac
Programming Languages:
MATLAB
Added:
5/5/2021
Last Updated:
11/24/2024

Operations

Publications

Sailem HZ, Sero JE, Bakal C. Visualizing cellular imaging data using PhenoPlot. Nature Communications. 2015;6(1). doi:10.1038/ncomms6825. PMID:25569359. PMCID:PMC4354266.

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