PhenoPlot
PhenoPlot transforms high-dimensional, image-derived feature vectors from high-content analysis into glyph-based visual representations to support interpretation of cellular phenotypes.
Key Features:
- Glyph-based visualization: Converts multi-faceted feature vectors into compact glyphs that encode multiple image-derived measurements.
- High-dimensional data handling: Processes high-dimensional image-based and high-content analysis datasets derived from microscopy.
- Cellular phenotype representation: Encodes quantitative descriptors of cellular phenotypes as visual elements within glyphs.
- Quantitative high-content imaging support: Represents quantitative measurements from high-content imaging experiments within the visualization.
- Hypothesis generation and interpretation: Facilitates data exploration to aid hypothesis generation, interpretation of results, and communication of findings.
Scientific Applications:
- Phenotypic exploration: Visual exploration of complex, image-derived cellular phenotypes encoded as multi-dimensional feature vectors.
- Breast cancer cell phenotype analysis: Visualization and comparison of complex breast cancer cell phenotypes using quantitative high-content imaging data.
- Data interpretation and communication: Communicating multi-parametric imaging results to support interpretation and collaborative analysis.
Methodology:
Transforms high-dimensional, image-derived feature vectors from high-content analysis into simplified glyph-based graphical representations.
Topics
Collections
Details
- License:
- GPL-2.0
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- library
- Operating Systems:
- Windows, Linux, Mac
- Programming Languages:
- MATLAB
- Added:
- 5/5/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Sailem HZ, Sero JE, Bakal C. Visualizing cellular imaging data using PhenoPlot. Nature Communications. 2015;6(1). doi:10.1038/ncomms6825. PMID:25569359. PMCID:PMC4354266.
Downloads
Links
Repository
https://github.com/hebasailem/PhenoPlotIssue tracker
https://github.com/hebasailem/PhenoPlot/issues