Phylemon

Phylemon 2.0 provides an integrated suite of tools for molecular evolution, phylogenetics, phylogenomics and evolutionary hypotheses testing.

Key Features:

• Integrated Environment: Supports evolutionary analysis workflows and format conversion to integrate multiple analysis steps.
• Guided Analysis Suggestions: Suggests subsequent analyses based on initial inputs.
• Phylogenetic Pipeline Design: Enables design and saving of custom phylogenetic pipelines that can be applied across multiple genes to support reproducibility.
• Comprehensive Tool Suite (30 tools): Includes sequence alignment reconstruction and trimming, tree reconstruction, visualization and manipulation, and evolutionary hypotheses testing.

Scientific Applications:

• Molecular evolution studies: Analyzing molecular evolutionary processes using sequence data.
• Phylogenetics: Reconstructing and analyzing phylogenetic trees to infer evolutionary relationships.
• Phylogenomics: Applying phylogenetic pipelines across multiple genes for genome-scale evolutionary analyses.
• Evolutionary hypotheses testing: Testing evolutionary hypotheses using the platform's integrated analysis tools.

Methodology:

Performs format conversion, sequence alignment reconstruction and trimming, tree reconstruction, visualization and manipulation, evolutionary hypotheses testing, and design/application of phylogenetic pipelines across multiple genes using an integrated set of 30 tools.