PhyloSuite

PhyloSuite integrates multiple software programs for multilocus phylogenetic reconstruction and tree-based analyses.

Key Features:

• Multilocus phylogeny: Integrates multiple software programs needed for multilocus and single-gene phylogenies.
• Signal-to-noise calculation: Performs signal-to-noise calculation as a tree-based analysis.
• Saturation analysis: Performs saturation analysis as a tree-based analysis.
• Spurious species identification: Performs spurious species identification as a tree-based analysis.
• Organelle-based analyses: Supports organelle-based phylogenetic analyses.

Scientific Applications:

• Molecular phylogeny: Conducts multilocus and single-gene phylogenetic reconstruction.
• Tree-based analyses: Performs various tree-based analyses including signal-to-noise calculation, saturation analysis, and spurious species identification.
• Genomic-era phylogenetics: Enables multilocus-based phylogenetic reconstruction in the genomics era.

Methodology:

PhyloSuite streamlines phylogenetic analysis by integrating multiple software programs into a unified pipeline for multilocus phylogenetic reconstruction and tree-based analyses.