Phylowood

Phylowood visualizes spatial-temporal phylogeographic and biogeographic histories through animated representations of annotated phylogenetic data.


Key Features:

  • Spatial-temporal Animations: Generates dynamic animations that depict historical distributions of species or lineages over time and space using annotated phylogenetic input.
  • Adjustable Resolution: Supports adjustable spatial and temporal resolution for animations to examine specific periods or regions within evolutionary histories.
  • Lineage Highlighting: Enables highlighting of specific phylogenetic lineages to focus analysis on particular branches.

Scientific Applications:

  • Biogeography and Phylogeography Visualization: Visualizes changes in species distributions over time to support studies in biogeography and phylogeography.
  • Hypothesis Generation and Testing: Facilitates generation and testing of hypotheses about historical biogeographic events driven by ecological and geological factors.

Methodology:

Integrates annotated phylogenetic data with geographic information systems (GIS) principles to create spatial-temporal animations and relies on JavaScript to render visualizations within a web browser.

Topics

Details

Tool Type:
api
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript, Ruby
Added:
5/10/2018
Last Updated:
12/10/2018

Operations

Publications

Landis MJ, Bedford T. Phylowood: interactive web-based animations of biogeographic and phylogeographic histories. Bioinformatics. 2013;30(1):123-124. doi:10.1093/bioinformatics/btt635. PMID:24191071. PMCID:PMC3866560.

Documentation