pico_galaxy

Short Python script (using Biopython library functions) to extract sequences from a FASTA, QUAL, FASTQ, or SFF file based on the list of IDs given by a column of a tabular file. The output order follows that of the tabular file, and if there are duplicates in the tabular file, there will be duplicates in the output sequence file.

Topics

Details

License:
Not licensed
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Programming Languages:
Python, Shell
Added:
6/18/2026
Last Updated:
7/10/2026

Operations

Data Inputs & Outputs