PICRUSt2

PICRUSt2 (Phylogenetic Investigation of Communities by Reconstruction of Unobserved States) is a software for predicting functional abundances based only on marker gene sequences.

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Topics

Metagenomics Microbiology Phylogenetics Metagenomic sequencing

Details

License:: GPL-3.0
Tool Type:: command-line tool, workflow
Programming Languages:: Python
Added:: 5/27/2021
Last Updated:: 11/24/2024

Operations

Publications

Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nature Biotechnology. 2020;38(6):685-688. doi:10.1038/s41587-020-0548-6. PMID:32483366. PMCID:PMC7365738.

DOI: 10.1038/s41587-020-0548-6

PMID: 32483366

PMCID: PMC7365738

Documentation

FAQ

https://github.com/picrust/picrust2/wiki/Frequently-Asked-Questions

Installation instructions

https://github.com/picrust/picrust2/wiki/Installation

Training material

https://github.com/picrust/picrust2/wiki/PICRUSt2-Tutorial-(v2.4.1)

Links

Issue tracker

https://github.com/picrust/picrust2/issues

Mailing list

https://groups.google.com/g/picrust-users

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