PiMS LIMS

PiMS LIMS manages high-throughput nanolitre-scale protein crystallization trials by linking crystallization trial images and metadata to support protein structure determination.


Key Features:

  • Nanolitre-scale crystallization management: Handles nanolitre-scale crystallization experiments conducted in 96-well and higher-density plates.
  • Image–metadata linkage: Links crystallization trial images with associated metadata via a database layer for comprehensive data management and retrieval.
  • Automated imager support: Supports integration with three automated imagers for high-throughput image acquisition.
  • Legacy database compatibility: Provides a mapping layer to interface with legacy databases and enable data integration.
  • PiMS standards compliance: Adheres to standards set by the Protein Information Management System (PiMS).

Scientific Applications:

  • Protein structure determination: Centralizes crystallization trial data and images to support workflows for protein structure determination.
  • Optimization of crystallization conditions: Facilitates optimization of crystallization conditions through tracking and analysis of trial outcomes.
  • High-throughput crystallization monitoring: Enables monitoring and management of large-scale crystallization trials at nanolitre scale in 96-well and higher-density plates.

Methodology:

Links visual data from crystallization trials with detailed metadata via a database layer and uses a mapping layer to interface with legacy databases.

Topics

Collections

Details

Tool Type:
api, web application
Operating Systems:
Linux, Windows, Mac
Added:
2/4/2015
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Data handling

Publications

Daniel E, Lin B, Diprose JM, Griffiths SL, Morris C, Berry IM, Owens RJ, Blake R, Wilson KS, Stuart DI, Esnouf RM. xtalPiMS: A PiMS-based web application for the management and monitoring of crystallization trials. Journal of Structural Biology. 2011;175(2):230-235. doi:10.1016/j.jsb.2011.05.008. PMID:21605683. PMCID:PMC3477317.

PMID: 21605683
PMCID: PMC3477317
Funding: - BBSRC: BBC5121101, BBC5121291, BBC5121371, BBC5121451

Documentation