PiMS LIMS
PiMS LIMS manages high-throughput nanolitre-scale protein crystallization trials by linking crystallization trial images and metadata to support protein structure determination.
Key Features:
- Nanolitre-scale crystallization management: Handles nanolitre-scale crystallization experiments conducted in 96-well and higher-density plates.
- Image–metadata linkage: Links crystallization trial images with associated metadata via a database layer for comprehensive data management and retrieval.
- Automated imager support: Supports integration with three automated imagers for high-throughput image acquisition.
- Legacy database compatibility: Provides a mapping layer to interface with legacy databases and enable data integration.
- PiMS standards compliance: Adheres to standards set by the Protein Information Management System (PiMS).
Scientific Applications:
- Protein structure determination: Centralizes crystallization trial data and images to support workflows for protein structure determination.
- Optimization of crystallization conditions: Facilitates optimization of crystallization conditions through tracking and analysis of trial outcomes.
- High-throughput crystallization monitoring: Enables monitoring and management of large-scale crystallization trials at nanolitre scale in 96-well and higher-density plates.
Methodology:
Links visual data from crystallization trials with detailed metadata via a database layer and uses a mapping layer to interface with legacy databases.
Topics
Collections
Details
- Tool Type:
- api, web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 2/4/2015
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Data handling
Outputs
Publications
Daniel E, Lin B, Diprose JM, Griffiths SL, Morris C, Berry IM, Owens RJ, Blake R, Wilson KS, Stuart DI, Esnouf RM. xtalPiMS: A PiMS-based web application for the management and monitoring of crystallization trials. Journal of Structural Biology. 2011;175(2):230-235. doi:10.1016/j.jsb.2011.05.008. PMID:21605683. PMCID:PMC3477317.