pksensi
pksensi performs global sensitivity analysis for physiologically based kinetic (PBK) models to quantify parameter uncertainty and sensitivity in multivariate pharmacokinetic and toxicokinetic model outputs.
Key Features:
- Global Sensitivity Analysis: Implements global SA methodologies to quantify parameter uncertainty and sensitivity across model outputs, including multivariate responses.
- R implementation: Provided as an R package for conducting sensitivity analyses within the R environment.
- Integration with PBK models: Interfaces with PBK models and supports solving the differential equations inherent to those models.
- Visualization and interpretation: Generates visualizations to assist interpretation of sensitivity results and to distinguish influential from non-influential parameters.
- Convergence checking: Includes functions to verify convergence of global SA results.
Scientific Applications:
- Model calibration: Identifies non-influential parameters to reduce computational burden during Bayesian Markov chain Monte Carlo (MCMC)-based calibration.
- Decision making: Provides quantitative insights into parameter influences to support model development and refinement decisions.
Methodology:
Conducts global sensitivity analysis to evaluate parameter uncertainty and sensitivity in physiologically based kinetic (PBK) models.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 3/19/2021
- Last Updated:
- 4/21/2021
Operations
Publications
Hsieh N, Reisfeld B, Chiu WA. pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling. SoftwareX. 2020;12:100609. doi:10.1016/j.softx.2020.100609. PMID:33426260. PMCID:PMC7790364.