pksensi

pksensi performs global sensitivity analysis for physiologically based kinetic (PBK) models to quantify parameter uncertainty and sensitivity in multivariate pharmacokinetic and toxicokinetic model outputs.


Key Features:

  • Global Sensitivity Analysis: Implements global SA methodologies to quantify parameter uncertainty and sensitivity across model outputs, including multivariate responses.
  • R implementation: Provided as an R package for conducting sensitivity analyses within the R environment.
  • Integration with PBK models: Interfaces with PBK models and supports solving the differential equations inherent to those models.
  • Visualization and interpretation: Generates visualizations to assist interpretation of sensitivity results and to distinguish influential from non-influential parameters.
  • Convergence checking: Includes functions to verify convergence of global SA results.

Scientific Applications:

  • Model calibration: Identifies non-influential parameters to reduce computational burden during Bayesian Markov chain Monte Carlo (MCMC)-based calibration.
  • Decision making: Provides quantitative insights into parameter influences to support model development and refinement decisions.

Methodology:

Conducts global sensitivity analysis to evaluate parameter uncertainty and sensitivity in physiologically based kinetic (PBK) models.

Topics

Details

License:
GPL-3.0
Tool Type:
library
Programming Languages:
R
Added:
3/19/2021
Last Updated:
4/21/2021

Operations

Publications

Hsieh N, Reisfeld B, Chiu WA. pksensi: An R package to apply global sensitivity analysis in physiologically based kinetic modeling. SoftwareX. 2020;12:100609. doi:10.1016/j.softx.2020.100609. PMID:33426260. PMCID:PMC7790364.

PMID: 33426260
PMCID: PMC7790364
Funding: - U.S. Food and Drug Administration: P42 ES027704

Documentation

Links