PLMLA

PLMLA predicts lysine methylation and acetylation sites in protein sequences to identify post-translational modification locations for studies of protein function and regulation.


Key Features:

  • In Silico Prediction: Performs sequence-based in silico analysis to predict potential lysine methylation and acetylation sites.
  • Focus on Lysine Modifications: Specifically targets lysine methylation and acetylation as post-translational modifications of interest.
  • Computational Algorithms: Leverages computational algorithms and protein sequence data to identify candidate modification sites.

Scientific Applications:

  • Protein Function Analysis: Predicts modification sites to aid interpretation of protein activity, localization, and interactions.
  • Regulatory Mechanisms: Identifies lysine modification patterns that inform studies of cellular regulatory processes.
  • Comparative Studies: Facilitates identification of conserved modification sites across species for comparative analyses.
  • Functional Genomics: Supports genome-scale prediction of lysine modifications to annotate protein function across genomes.
  • Disease Mechanism Exploration: Helps detect aberrant modification patterns relevant to disrupted protein regulation in disease.
  • Drug Target Identification: Highlights proteins with critical lysine modification sites that may serve as therapeutic targets.

Methodology:

Employs computational algorithms to analyze protein sequence data and predict potential lysine methylation and acetylation sites; specific algorithmic details are not provided.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
MATLAB
Added:
12/18/2017
Last Updated:
12/10/2018

Operations

Publications

Trost B, Kusalik A. Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights. Bioinformatics. 2013;29(6):686-694. doi:10.1093/bioinformatics/btt031.

Links