PLMLA
PLMLA predicts lysine methylation and acetylation sites in protein sequences to identify post-translational modification locations for studies of protein function and regulation.
Key Features:
- In Silico Prediction: Performs sequence-based in silico analysis to predict potential lysine methylation and acetylation sites.
- Focus on Lysine Modifications: Specifically targets lysine methylation and acetylation as post-translational modifications of interest.
- Computational Algorithms: Leverages computational algorithms and protein sequence data to identify candidate modification sites.
Scientific Applications:
- Protein Function Analysis: Predicts modification sites to aid interpretation of protein activity, localization, and interactions.
- Regulatory Mechanisms: Identifies lysine modification patterns that inform studies of cellular regulatory processes.
- Comparative Studies: Facilitates identification of conserved modification sites across species for comparative analyses.
- Functional Genomics: Supports genome-scale prediction of lysine modifications to annotate protein function across genomes.
- Disease Mechanism Exploration: Helps detect aberrant modification patterns relevant to disrupted protein regulation in disease.
- Drug Target Identification: Highlights proteins with critical lysine modification sites that may serve as therapeutic targets.
Methodology:
Employs computational algorithms to analyze protein sequence data and predict potential lysine methylation and acetylation sites; specific algorithmic details are not provided.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- MATLAB
- Added:
- 12/18/2017
- Last Updated:
- 12/10/2018
Operations
Publications
Trost B, Kusalik A. Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights. Bioinformatics. 2013;29(6):686-694. doi:10.1093/bioinformatics/btt031.