PncStress
PncStress curates experimentally validated plant stress-responsive non-coding RNAs (ncRNAs) to support analysis of ncRNA roles in biotic and abiotic stress responses.
Key Features:
- Extensive Data Collection: The database compiles 4,227 entries from 114 plant species covering 48 types of biotic stresses and 91 types of abiotic stresses.
- Diverse RNA Types: Entries include microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs).
- Manually Curated Content: All entries are manually curated and based on experimental validation.
- Biological Information: Each ncRNA entry includes detailed biological information relevant to stress response pathways.
- Network Visualization: Network representations of ncRNA interactions and regulatory relationships are provided for analysis.
Scientific Applications:
- Functional Genomics: Investigation of specific ncRNA functions and regulatory roles in plant stress response pathways.
- Comparative Studies: Comparative analyses across different plant species and stress types to identify conserved and divergent mechanisms.
- Biotechnological Applications: Informing strategies for crop improvement and enhanced resistance to biotic and abiotic stresses.
Methodology:
Manual literature curation of experimentally validated ncRNA entries and compilation of associated biological information, with network relationships represented for visualization.
Topics
Details
- Added:
- 1/18/2021
- Last Updated:
- 1/24/2021
Operations
Publications
Wu W, Wu Y, Hu D, Zhou Y, Hu Y, Chen Y, Chen M. PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants. Database. 2020;2020. doi:10.1093/database/baaa001. PMID:32185394. PMCID:PMC7078067.
PMID: 32185394
PMCID: PMC7078067
Funding: - National Natural Science Foundation of China: 31571366, 31771477
- National Key Research and Development Program of China: 2016YFA0501704, 2018YFC0310602