POMAShiny
POMAShiny provides statistical analysis and interpretation of metabolomics and proteomics data for biomarker discovery and precision medicine.
Key Features:
- Integrated statistical methods: Incorporates a variety of statistical methods used in omics analyses to enable comprehensive and flexible analysis of metabolomics and proteomics data.
- Dataset flexibility: Supports diverse metabolomics and proteomics datasets and adaptable workflows suitable for different experimental designs.
- POMA R/Bioconductor foundation: Built on the POMA R/Bioconductor package to support reproducibility and facilitate extension of analyses outside the environment.
Scientific Applications:
- Biomarker discovery: Facilitates identification of metabolite and protein biomarkers through statistical analysis and biological interpretation.
- Precision medicine: Supports molecular profiling and sample stratification using metabolomics and proteomics data to inform precision medicine studies.
Methodology:
Built on the POMA R/Bioconductor package and supports performing analyses within a web environment while enabling extension of analyses outside that environment.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 11/24/2021
- Last Updated:
- 11/24/2021
Operations
Publications
Castellano-Escuder P, González-Domínguez R, Carmona-Pontaque F, Andrés-Lacueva C, Sánchez-Pla A. POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis. PLOS Computational Biology. 2021;17(7):e1009148. doi:10.1371/journal.pcbi.1009148. PMID:34197462. PMCID:PMC8279420.
PMID: 34197462
PMCID: PMC8279420
Funding: - Joint Programming Initiative A healthy diet for a healthy life: AC19 00111, PCIN2017-076, Project AC19/00096
- Instituto de Salud Carlos III: CIBERFES
- AGAUR: 2017SGR1546
Documentation
User manual
http://142.93.143.140:3838/POMAShiny