POMAShiny

POMAShiny provides statistical analysis and interpretation of metabolomics and proteomics data for biomarker discovery and precision medicine.


Key Features:

  • Integrated statistical methods: Incorporates a variety of statistical methods used in omics analyses to enable comprehensive and flexible analysis of metabolomics and proteomics data.
  • Dataset flexibility: Supports diverse metabolomics and proteomics datasets and adaptable workflows suitable for different experimental designs.
  • POMA R/Bioconductor foundation: Built on the POMA R/Bioconductor package to support reproducibility and facilitate extension of analyses outside the environment.

Scientific Applications:

  • Biomarker discovery: Facilitates identification of metabolite and protein biomarkers through statistical analysis and biological interpretation.
  • Precision medicine: Supports molecular profiling and sample stratification using metabolomics and proteomics data to inform precision medicine studies.

Methodology:

Built on the POMA R/Bioconductor package and supports performing analyses within a web environment while enabling extension of analyses outside that environment.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
11/24/2021
Last Updated:
11/24/2021

Operations

Publications

Castellano-Escuder P, González-Domínguez R, Carmona-Pontaque F, Andrés-Lacueva C, Sánchez-Pla A. POMAShiny: A user-friendly web-based workflow for metabolomics and proteomics data analysis. PLOS Computational Biology. 2021;17(7):e1009148. doi:10.1371/journal.pcbi.1009148. PMID:34197462. PMCID:PMC8279420.

PMID: 34197462
PMCID: PMC8279420
Funding: - Joint Programming Initiative A healthy diet for a healthy life: AC19 00111, PCIN2017-076, Project AC19/00096 - Instituto de Salud Carlos III: CIBERFES - AGAUR: 2017SGR1546

Documentation

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