PopART-IBM
PopART-IBM simulates HIV epidemic dynamics in high-prevalence settings using an individual-based model tailored to the HPTN 071 (PopART) trial.
Key Features:
- Individual-Based Modeling: Explicitly models individual sexual partnerships and incorporates behavioral and biological heterogeneities within sexual networks for detailed transmission representation.
- Computational Efficiency: Capable of simulating 50 years of an HIV epidemic in a large community in under one minute.
- Calibration and Bayesian Inference: Employs a Bayesian inference framework to calibrate against age- and sex-stratified data from multiple sources, including HIV prevalence, awareness of HIV status, antiretroviral therapy (ART) status, and viral suppression in the study community in Zambia.
- Projections and Scenario Analysis: Produces future projections of HIV prevalence and incidence and evaluates counterfactual outcomes such as scenarios in the absence of trial interventions.
Scientific Applications:
- Transmission dynamics analysis: Enables detailed study of HIV transmission within sexual networks accounting for behavioral and biological heterogeneities.
- Intervention scenario evaluation: Allows exploration of intervention scenarios and their impacts on epidemic trajectories, including counterfactuals relevant to HPTN 071 (PopART).
- Epidemic projection and planning: Generates long-term projections of HIV prevalence and incidence to inform public health planning and policy in high-prevalence settings.
- Data-integrated inference: Integrates age- and sex-stratified empirical data (prevalence, status awareness, ART, viral suppression) to produce community-specific calibrated inferences.
Methodology:
Explicit individual-based modeling of behaviors and sexual partnerships combined with Bayesian inference calibration to age- and sex-stratified data (HIV prevalence, awareness of status, ART status, viral suppression) from multiple sources in the study community in Zambia.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- C, Python
- Added:
- 2/8/2022
- Last Updated:
- 2/8/2022
Operations
Publications
Pickles M, Cori A, Probert WJM, Sauter R, Hinch R, Fidler S, Ayles H, Bock P, Donnell D, Wilson E, Piwowar-Manning E, Floyd S, Hayes RJ, Fraser C. PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial. PLOS Computational Biology. 2021;17(9):e1009301. doi:10.1371/journal.pcbi.1009301. PMID:34473700. PMCID:PMC8478209.