PopART-IBM

PopART-IBM simulates HIV epidemic dynamics in high-prevalence settings using an individual-based model tailored to the HPTN 071 (PopART) trial.


Key Features:

  • Individual-Based Modeling: Explicitly models individual sexual partnerships and incorporates behavioral and biological heterogeneities within sexual networks for detailed transmission representation.
  • Computational Efficiency: Capable of simulating 50 years of an HIV epidemic in a large community in under one minute.
  • Calibration and Bayesian Inference: Employs a Bayesian inference framework to calibrate against age- and sex-stratified data from multiple sources, including HIV prevalence, awareness of HIV status, antiretroviral therapy (ART) status, and viral suppression in the study community in Zambia.
  • Projections and Scenario Analysis: Produces future projections of HIV prevalence and incidence and evaluates counterfactual outcomes such as scenarios in the absence of trial interventions.

Scientific Applications:

  • Transmission dynamics analysis: Enables detailed study of HIV transmission within sexual networks accounting for behavioral and biological heterogeneities.
  • Intervention scenario evaluation: Allows exploration of intervention scenarios and their impacts on epidemic trajectories, including counterfactuals relevant to HPTN 071 (PopART).
  • Epidemic projection and planning: Generates long-term projections of HIV prevalence and incidence to inform public health planning and policy in high-prevalence settings.
  • Data-integrated inference: Integrates age- and sex-stratified empirical data (prevalence, status awareness, ART, viral suppression) to produce community-specific calibrated inferences.

Methodology:

Explicit individual-based modeling of behaviors and sexual partnerships combined with Bayesian inference calibration to age- and sex-stratified data (HIV prevalence, awareness of status, ART status, viral suppression) from multiple sources in the study community in Zambia.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
C, Python
Added:
2/8/2022
Last Updated:
2/8/2022

Operations

Publications

Pickles M, Cori A, Probert WJM, Sauter R, Hinch R, Fidler S, Ayles H, Bock P, Donnell D, Wilson E, Piwowar-Manning E, Floyd S, Hayes RJ, Fraser C. PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial. PLOS Computational Biology. 2021;17(9):e1009301. doi:10.1371/journal.pcbi.1009301. PMID:34473700. PMCID:PMC8478209.

PMID: 34473700
PMCID: PMC8478209
Funding: - National Institute of Allergy and Infectious Diseases: UM1-AI068613, UM1-AI068617, UM1-AI068619 - MRC Centre for Global infectious Disease Analysis: MR/R015600/1

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