PredAOT

PredAOT predicts acute oral toxicity of small chemical compounds in mice and rats to support early-stage drug development decision-making.


Key Features:

  • Multiple Random Forest Models: Uses multiple random forest models as the core machine-learning approach for toxicity prediction.
  • Training Data: Models trained on datasets comprising 6,226 compounds evaluated in mice and 6,238 compounds evaluated in rats.
  • Dual-Species Prediction: Provides predictions for both mice and rats.
  • Benchmarking: Performance has been benchmarked against existing tools, showing similar or superior predictive accuracy.
  • Target Compounds: Focuses on small chemical compounds relevant to early-stage drug development.

Scientific Applications:

  • Acute Oral Toxicity Screening (Mouse): Predicts acute oral toxicity outcomes for candidate compounds in mice.
  • Acute Oral Toxicity Screening (Rat): Predicts acute oral toxicity outcomes for candidate compounds in rats.
  • Early-Stage Drug Candidate Prioritization: Supports prioritization of small-molecule candidates based on predicted toxicity profiles.
  • Cross-Species Assessment: Enables assessment across two rodent species to inform comparative toxicology decisions.

Methodology:

Multiple random forest models trained on datasets of 6,226 mouse compounds and 6,238 rat compounds.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
3/18/2023
Last Updated:
11/24/2024

Operations

Publications

Ryu JY, Jang WD, Jang J, Oh K. PredAOT: a computational framework for prediction of acute oral toxicity based on multiple random forest models. BMC Bioinformatics. 2023;24(1). doi:10.1186/s12859-023-05176-5. PMID:36829107. PMCID:PMC9951537.

PMID: 36829107
PMCID: PMC9951537
Funding: - National Research Foundation of Korea: NRF-2020R1C1C1003218 - Korea Research Institute of Chemical Technology: SI2231-30-0221082086810001

Links