PredAOT
PredAOT predicts acute oral toxicity of small chemical compounds in mice and rats to support early-stage drug development decision-making.
Key Features:
- Multiple Random Forest Models: Uses multiple random forest models as the core machine-learning approach for toxicity prediction.
- Training Data: Models trained on datasets comprising 6,226 compounds evaluated in mice and 6,238 compounds evaluated in rats.
- Dual-Species Prediction: Provides predictions for both mice and rats.
- Benchmarking: Performance has been benchmarked against existing tools, showing similar or superior predictive accuracy.
- Target Compounds: Focuses on small chemical compounds relevant to early-stage drug development.
Scientific Applications:
- Acute Oral Toxicity Screening (Mouse): Predicts acute oral toxicity outcomes for candidate compounds in mice.
- Acute Oral Toxicity Screening (Rat): Predicts acute oral toxicity outcomes for candidate compounds in rats.
- Early-Stage Drug Candidate Prioritization: Supports prioritization of small-molecule candidates based on predicted toxicity profiles.
- Cross-Species Assessment: Enables assessment across two rodent species to inform comparative toxicology decisions.
Methodology:
Multiple random forest models trained on datasets of 6,226 mouse compounds and 6,238 rat compounds.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- command-line tool, web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 3/18/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Ryu JY, Jang WD, Jang J, Oh K. PredAOT: a computational framework for prediction of acute oral toxicity based on multiple random forest models. BMC Bioinformatics. 2023;24(1). doi:10.1186/s12859-023-05176-5. PMID:36829107. PMCID:PMC9951537.
PMID: 36829107
PMCID: PMC9951537
Funding: - National Research Foundation of Korea: NRF-2020R1C1C1003218
- Korea Research Institute of Chemical Technology: SI2231-30-0221082086810001
Links
Repository
https://github.com/CSB-L/PredAOT