PredMS

PredMS predicts the metabolic stability of small compounds in human liver microsomes to support early-stage drug discovery and compound prioritization.


Key Features:

  • Model Basis: PredMS employs a random forest algorithm, leveraging its robustness for classification tasks.
  • Training Data: The model was trained on an in-house database of metabolic stability measurements from 1,917 compounds.
  • Prediction Categories: PredMS classifies small compounds as either stable or unstable with respect to metabolic stability in human liver microsomes.

Scientific Applications:

  • Early-stage screening: Predicting metabolic stability in human liver microsomes to inform compound selection in drug discovery.
  • Candidate prioritization: Prioritizing compounds for experimental testing and progression decisions based on predicted stability.
  • Reducing experimental burden: Minimizing costly and time-consuming in vitro metabolic stability evaluations by providing predictive assessments.

Methodology:

PredMS was developed by training a random forest classification model on an in-house metabolic stability dataset of 1,917 compounds.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
2/8/2022
Last Updated:
2/8/2022

Operations

Data Inputs & Outputs

Indel detection

Outputs

    Publications

    Ryu JY, Lee JH, Lee BH, Song JS, Ahn S, Oh K. PredMS: a random forest model for predicting metabolic stability of drug candidates in human liver microsomes. Bioinformatics. 2021;38(2):364-368. doi:10.1093/bioinformatics/btab547. PMID:34515778.

    PMID: 34515778
    Funding: - Korean government: 2020R1C1C1003218, NRF-2019M3E5D4065860