preon

preon normalizes drug names and cancer types to enable fast and accurate entity normalization for large-scale data integration in precision oncology.

Key Features:

• Entity normalization: Harmonizes tumor entities and therapy options across diverse databases.
• Large-scale data integration: Facilitates incorporation and integration of vast information from different knowledge bases in precision oncology.

Scientific Applications:

• Precision oncology data harmonization: Supports the manual annotation and evaluation of individual variants by normalizing drug names and cancer types across multiple knowledge bases.
• Database integration: Enables integration of molecular characterization data with treatment information from diverse sources to identify optimal patient therapies.

Methodology:

Implemented in Python.