PRmePRed

PRmePRed predicts protein arginine methylation sites in proteomes to identify potential post-translational modification locations.


Key Features:

  • Comprehensive Data Analysis: Employs extensive data analysis to inform prediction models and ensure biological relevance.
  • Biological Feature Appraisal: Appraises features for biological significance during model development.
  • Performance Metrics: Achieves 84.10% accuracy, 82.38% sensitivity, 83.77% specificity, and a Matthew's correlation coefficient (MCC) of 66.20% in 10-fold cross-validation.

Scientific Applications:

  • Rapid Screening: Enables rapid screening of proteomes to identify candidate arginine methylation sites for downstream experimental validation.
  • Biological Research: Supports investigation of arginine methylation roles in gene regulation and signal transduction.
  • Drug Discovery and Development: Aids identification of arginine methylation sites that may inform therapeutic target discovery and drug development.

Methodology:

Integrates extensive data analysis and appraisal of biologically significant features and evaluates predictive performance using 10-fold cross-validation.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
PHP
Added:
6/4/2018
Last Updated:
11/25/2024

Operations

Publications

Kumar P, Joy J, Pandey A, Gupta D. PRmePRed: A protein arginine methylation prediction tool. PLOS ONE. 2017;12(8):e0183318. doi:10.1371/journal.pone.0183318. PMID:28813517. PMCID:PMC5557562.

PMID: 28813517
PMCID: PMC5557562
Funding: - Department of Biotechnology, Ministry of Science and Technology (IN): BT/PR6963/BID/7/427/2012 - Department of Biotechnology, Ministry of Science and Technology: BT/BI/25/066/2012

Documentation