Proline

Set of programs dedicated to perform proteomics data computations and render the obtained results in user-friendly GUIs. It focuses on: result validation (using custom filters and target decoy analysis), merge/comparison of datasets and label-free quantification (spectral count and LC-MS analyses).
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Topics

ProteomicsProteomics experiment

Collections

Proteomics

Details

License:
CECILL-2.1
Maturity:
Emerging
Cost:
Free of charge
Tool Type:
workflow
Operating Systems:
Linux, Windows
Programming Languages:
Java, Scala
Added:
1/10/2017
Last Updated:
6/16/2020

Operations

Documentation

User manual
http://proline.profiproteomics.fr/doc/1.4/

Downloads

  • Binaries
    http://proline.profiproteomics.fr/download/
  • Test data
    http://proline.profiproteomics.fr/download/
    Samples (2 ?g of yeast cell lysate + different spiked levels of UPS1) were analyzed in triplicate by nanoLC–MS/MS on an LTQ-Orbitrap Velos mass spectrometer. For more information on samples preparation and LC-MS/MS analyses, please refer to Ramus et al., J Proteomics. 2016 Jan 30;132:51-62. doi: 10.1016/j.jprot.2015.11.011. Thermo Raw files, mzDB files, Mascot result files (.DAT).

Links

Social media
http://proline-proteomics.forumactif.com/
(Support and discussion forum)
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