ProteoDisco
ProteoDisco integrates genomic and transcriptomic variants into protein sequences to enable proteogenomic analysis using standardized data formats.
Key Features:
- Flexible Integration: Incorporates genomic and transcriptomic variants into protein sequences via standardized data formats.
- Customizable Workflow: Provides a structured, customizable workflow for integration and annotation of variant-derived protein sequences.
- Broad Applicability: Operates on any organism with available reference genomes and transcript annotations.
Scientific Applications:
- Functional Exploration: Supports detailed exploration of genomic and transcriptomic variations at the protein level.
Methodology:
Integration of genomic and transcriptomic variant data into protein sequences using standardized data formats and a structured, customizable workflow that leverages reference genomes and transcript annotations for annotation and analysis.
Topics
Details
- Tool Type:
- web application
- Programming Languages:
- R
- Added:
- 10/22/2021
- Last Updated:
- 10/22/2021
Operations
Publications
van de Geer WS, van Riet J, van de Werken HJG. ProteoDisco: A flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies. Unknown Journal. 2021. doi:10.1101/2021.09.17.460755.