ProteoDisco

ProteoDisco integrates genomic and transcriptomic variants into protein sequences to enable proteogenomic analysis using standardized data formats.


Key Features:

  • Flexible Integration: Incorporates genomic and transcriptomic variants into protein sequences via standardized data formats.
  • Customizable Workflow: Provides a structured, customizable workflow for integration and annotation of variant-derived protein sequences.
  • Broad Applicability: Operates on any organism with available reference genomes and transcript annotations.

Scientific Applications:

  • Functional Exploration: Supports detailed exploration of genomic and transcriptomic variations at the protein level.

Methodology:

Integration of genomic and transcriptomic variant data into protein sequences using standardized data formats and a structured, customizable workflow that leverages reference genomes and transcript annotations for annotation and analysis.

Topics

Details

Tool Type:
web application
Programming Languages:
R
Added:
10/22/2021
Last Updated:
10/22/2021

Operations

Publications

van de Geer WS, van Riet J, van de Werken HJG. ProteoDisco: A flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies. Unknown Journal. 2021. doi:10.1101/2021.09.17.460755.