PSSR
PSSR enhances resolution and signal-to-noise ratio of point-scanning imaging data from scanning electron microscopes and laser scanning confocal microscopes using deep learning-based supersampling.
Key Features:
- Deep Learning-Based Supersampling: Employs a deep learning framework to perform supersampling of undersampled point-scanning images to improve spatial resolution.
- Simulated Training Data ('crappifier'): Uses a 'crappifier' algorithm to degrade high-SNR, high-pixel-resolution ground-truth images into simulated low-SNR, low-resolution counterparts for model training.
- Multi-Frame Approach: Integrates information from adjacent frames for fluorescence time-lapse or other sequential data to improve spatiotemporal reconstruction accuracy.
Scientific Applications:
- Cellular and Tissue Imaging: Enhances detail in cellular and tissue images acquired by point-scanning modalities for downstream analysis.
- Time-Lapse Fluorescence Imaging: Improves spatiotemporal resolution in fluorescence time-lapse datasets by leveraging adjacent-frame information.
- Improved SNR and Reduced Acquisition Burden: Enables restoration of low-SNR, undersampled data, supporting faster acquisition and potential sample preservation.
Methodology:
Computational methods explicitly include deep learning-based supersampling trained on pairs of high-quality ground-truth and simulated low-quality images produced by a 'crappifier' degradation algorithm, with an optional multi-frame model that incorporates adjacent frames for prediction.
Topics
Details
- License:
- BSD-3-Clause
- Cost:
- Free of charge (with restrictions)
- Programming Languages:
- Python
- Added:
- 11/1/2021
- Last Updated:
- 11/1/2021
Operations
Publications
Fang L, Monroe F, Novak SW, Kirk L, Schiavon CR, Yu SB, Zhang T, Wu M, Kastner K, Latif AA, Lin Z, Shaw A, Kubota Y, Mendenhall J, Zhang Z, Pekkurnaz G, Harris K, Howard J, Manor U. Deep learning-based point-scanning super-resolution imaging. Nature Methods. 2021;18(4):406-416. doi:10.1038/s41592-021-01080-z. PMID:33686300. PMCID:PMC8035334.