DRAVP
DRAVP provides a curated database of antiviral peptides and proteins to support discovery, characterization, and structure-guided design of antiviral agents.
Key Features:
- Extensive Data Repository: DRAVP consolidates general details, antiviral activity profiles, structural data, physicochemical properties, and literature references for antiviral peptides and proteins.
- Structural Predictions with AlphaFold: DRAVP uses AlphaFold to predict structures of antiviral peptides and proteins that lack experimentally determined structures.
- Coverage of Natural and Synthetic Antivirals: DRAVP includes naturally occurring antiviral proteins (e.g., interferons) and synthetic antimicrobial peptides (e.g., defensins), with annotations on antiviral effects and immune-modulatory capacity.
Scientific Applications:
- Antiviral Candidate Identification: Use curated activity profiles and physicochemical properties to identify and prioritize antiviral peptide and protein candidates.
- Structure-Guided Design: Employ AlphaFold-predicted and curated structural data to model peptide–protein interactions and guide rational design of improved compounds.
- Mechanistic and Interdisciplinary Studies: Support analysis of mechanisms of action and studies integrating bioinformatics, structural biology, and pharmacology.
Methodology:
Consolidation of literature-derived annotations and use of AlphaFold for structure prediction of antiviral peptides and proteins.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- PHP, JavaScript
- Added:
- 10/15/2023
- Last Updated:
- 10/15/2023
Operations
Publications
Liu Y, Zhu Y, Sun X, Ma T, Lao X, Zheng H. DRAVP: A Comprehensive Database of Antiviral Peptides and Proteins. Viruses. 2023;15(4):820. doi:10.3390/v15040820. PMID:37112801. PMCID:PMC10141206.
DOI: 10.3390/V15040820
PMID: 37112801
PMCID: PMC10141206
Funding: - National Natural Science Foundation of China: 82073767, 82273834, PAPD2014-65
- Priority Academic Program Development of Jiangsu Higher Education Institutions: 82073767, 82273834, PAPD2014-65
Links
Repository
https://github.com/CPUDRAVP/DRAVP