PubTator

PubTator automates text mining from PubMed-like biomedical literature to extract relevant information for automated curation and bioinformatics research.


Key Features:

  • Automated text mining: Extracts relevant information from PubMed-like biomedical literature at scale.
  • Advanced text mining algorithms: Uses advanced algorithms for information extraction from biomedical text.
  • Rigorous evaluation: Algorithms have been rigorously evaluated and demonstrate high-quality results.
  • Challenge performance: Demonstrates reliability through success in challenge competitions.
  • Large-scale processing and accuracy: Enables efficient processing of large datasets with improved accuracy.

Scientific Applications:

  • Bioinformatics Research: Supports drug discovery, genetic research, and clinical studies by automating curation processes.

Methodology:

Employs advanced text mining algorithms to extract relevant information from biomedical literature; these algorithms have been rigorously evaluated and demonstrated reliability in challenge competitions, enabling efficient processing of large datasets with improved accuracy.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
3/25/2017
Last Updated:
12/10/2018

Operations

Publications

Wei CH, et al. PubTator: a web-based text mining tool for assisting biocuration. Nucleic Acids Res. 2013; 41:W518-22. doi: 10.1093/nar/gkt441

PMID: 23703206

Documentation