pviz

pviz visualizes protein sequences and associated features as interactive representations to support exploration of sequence regions and annotations.

Key Features:

• Interactive Zooming: Provides scalable rendering to inspect sequence elements and annotations at multiple resolutions.
• Variety of Renderings: Supports secondary structure and post-translational modification visualizations in addition to basic box alignment displays.
• User Customization: Enables customization of displayed tracks and annotations to match research-specific feature sets.

Scientific Applications:

• Proteomic Data Visualization: Maps proteomic data features onto protein sequences and structures for visualization and interpretation.
• Variation Effect Prediction: Visualizes variant_effect_predictor tool results from Ensembl to display predicted variant consequences on protein features.

Methodology:

Processes sequence and feature location inputs and renders interactive visualizations using JavaScript for dynamic display.