pyControl
pyControl controls and sequences behavioral neuroscience experiments by defining tasks as Python-based extended state machines and interfacing with laboratory hardware for precise experimental control.
Key Features:
- Python-based extended state machines: Defines behavioral tasks using Python scripts structured as extended state machines to express complex task logic.
- Hardware modules: Includes hardware modules to construct diverse behavioral setups and implement task-specific hardware interactions.
- Scalability and high-throughput control: Supports scalable control of multiple experimental setups to enable high-throughput experimentation.
- Reproducibility and self-documenting task definitions: Employs highly readable, self-documenting task definitions to facilitate reproducibility and communication of experimental protocols.
Scientific Applications:
- Behavioral task implementation: Implementation and execution of richly structured behavioral tasks for neuroscience experiments.
- Linking behavior and neural mechanisms: Experiments probing interactions between behavior and neural activity under controlled conditions.
- Large-scale behavioral data collection: High-throughput experimental campaigns requiring standardized task definitions and scalable control across setups.
Methodology:
Experimental protocols are specified using Python scripts structured as extended state machines, and hardware modules are integrated to implement these protocols on laboratory setups.
Topics
Details
- Tool Type:
- command-line tool, library
- Programming Languages:
- Python
- Added:
- 3/19/2021
- Last Updated:
- 3/30/2021
Operations
Publications
Akam T, Lustig A, Rowland J, Kapanaiah SK, Esteve-Agraz J, Panniello M, Marquez C, Kohl M, Kätzel D, Costa RM, Walton M. pyControl: Open source, Python based, hardware and software for controlling behavioural neuroscience experiments. Unknown Journal. 2021. doi:10.1101/2021.02.22.432227.
Documentation
User manual
https://pycontrol.readthedocs.ioLinks
Discussion forum
https://groups.google.com/g/pycontrol