PyFDAP

PyFDAP analyzes Fluorescence Decay After Photoconversion (FDAP) datasets by fitting linear and non-linear decay functions to model fluorescence decay processes.


Key Features:

  • Decay function fitting: Fits linear and non-linear decay functions to FDAP datasets to model fluorescence decay.
  • Multiple fitting algorithms: Supports multiple fitting algorithms to select appropriate models for FDAP data.
  • Data structuring and large-dataset handling: Provides robust data structuring and efficient processing of large FDAP datasets.
  • Plotting and visualization: Includes plotting options to visualize raw FDAP data and fitted decay models.
  • Implementation: Implemented in Python.

Scientific Applications:

  • Fluorescence decay modeling: Quantifies decay kinetics from FDAP experiments by fitting decay models to photoconversion data.
  • Photoconversion and fluorescence-based studies: Supports interpretation of photoconversion dynamics and other fluorescence-based biological phenomena through fitted decay models.

Methodology:

Computational methods include fitting linear and non-linear decay functions using multiple fitting algorithms, robust data structuring and processing for large FDAP datasets, and plotting of raw data and fitted models; the software is implemented in Python.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

Bläßle A, Müller P. PyFDAP: automated analysis of fluorescence decay after photoconversion (FDAP) experiments. Bioinformatics. 2014;31(6):972-974. doi:10.1093/bioinformatics/btu735. PMID:25380959.

Documentation

Links