PyJAMAS

PyJAMAS performs high-resolution image analysis and visualization for processing and quantitative analysis of scientific image data.


Key Features:

  • High-Resolution Image Analysis: Supports detailed image analysis and processing of high-resolution scientific images.
  • Data Visualization: Provides visualization capabilities for quantitative outputs from image analysis.
  • Compatibility: Supports multiple data formats and computing platforms.

Scientific Applications:

  • Cell Biology Research: Applicable to detailed image analysis required for cell biology studies.
  • Other Scientific Fields: Applicable in other scientific areas that require precise image processing and visualization.

Methodology:

No computational methods, algorithms, or processing steps were specified in the provided description.

Topics

Details

License:
Not licensed
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
12/15/2021
Last Updated:
11/24/2024

Operations

Publications

Fernandez-Gonzalez R, Balaghi N, Wang K, Hawkins R, Rothenberg K, McFaul C, Schimmer C, Ly M, do Carmo AM, Scepanovic G, Erdemci-Tandogan G, Castle V. PyJAMAS: open-source, multimodal segmentation and analysis of microscopy images. Bioinformatics. 2021;38(2):594-596. doi:10.1093/bioinformatics/btab589. PMID:34390579. PMCID:PMC8722751.

PMID: 34390579
PMCID: PMC8722751
Funding: - Natural Sciences and Engineering Research Council of Canada: 418438-13 - Canada Foundation for Innovation: 30279 - Government of Ontario: ER14-10-170 - Canadian Institutes of Health Research: 156279

Documentation

User manual', 'General
http://pyjamas.readthedocs.io

Links