PyLDM
PyLDM performs lifetime density analysis of time-resolved ultrafast spectroscopic data, extracting semi-continuous distributions of lifetimes to characterize dynamic energy and charge transfer processes in systems such as photosynthetic complexes.
Key Features:
- Lifetime Density Analysis (LDA): Implements LDA using a semi-continuous distribution of 100 lifetimes as an alternative to approximating data with a small number of exponential decays.
- Dynamic Motion Resolution: Resolves dynamic motion and non-linear decay behavior that conventional global analysis, based on linear combinations of exponentials, cannot describe.
- Complex Chromophore Systems: Enables elucidation of lifetime distributions in systems with multiple chromophores such as photosystems.
- Comparison with Global and Target Analysis: Provides direct comparison of LDA results with global analysis and target analysis approaches.
- Statistical Regularization: Incorporates statistical methods to regularize noisy time-resolved data and stabilize inferred lifetime distributions.
- Implementation: Implemented in Python (version 2.7).
Scientific Applications:
- Photosynthetic complexes: Characterizes energy transfer and charge separation dynamics in photosystems and other photosynthetic assemblies.
- Photoactive compounds: Analyzes ultrafast energy and charge transfer processes in multi-chromophore photoactive molecules.
- Transient species analysis: Identifies and characterizes transient states and their interactions in time-resolved spectroscopic experiments.
- Complementary analysis: Serves as a complementary method to global and target analysis for interpreting complex ultrafast spectroscopic data.
Methodology:
Implements lifetime density analysis on a semi-continuous grid of 100 lifetimes, compares LDA outputs with global and target analysis, and applies statistical regularization to noisy data; implemented in Python 2.7.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- workflow
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 6/26/2018
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Dorlhiac GF, Fare C, van Thor JJ. PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data. PLOS Computational Biology. 2017;13(5):e1005528. doi:10.1371/journal.pcbi.1005528. PMID:28531219. PMCID:PMC5460884.
Documentation
Downloads
- Source codehttps://github.com/gadorlhiac/PyLDM