PyLDM

PyLDM performs lifetime density analysis of time-resolved ultrafast spectroscopic data, extracting semi-continuous distributions of lifetimes to characterize dynamic energy and charge transfer processes in systems such as photosynthetic complexes.


Key Features:

  • Lifetime Density Analysis (LDA): Implements LDA using a semi-continuous distribution of 100 lifetimes as an alternative to approximating data with a small number of exponential decays.
  • Dynamic Motion Resolution: Resolves dynamic motion and non-linear decay behavior that conventional global analysis, based on linear combinations of exponentials, cannot describe.
  • Complex Chromophore Systems: Enables elucidation of lifetime distributions in systems with multiple chromophores such as photosystems.
  • Comparison with Global and Target Analysis: Provides direct comparison of LDA results with global analysis and target analysis approaches.
  • Statistical Regularization: Incorporates statistical methods to regularize noisy time-resolved data and stabilize inferred lifetime distributions.
  • Implementation: Implemented in Python (version 2.7).

Scientific Applications:

  • Photosynthetic complexes: Characterizes energy transfer and charge separation dynamics in photosystems and other photosynthetic assemblies.
  • Photoactive compounds: Analyzes ultrafast energy and charge transfer processes in multi-chromophore photoactive molecules.
  • Transient species analysis: Identifies and characterizes transient states and their interactions in time-resolved spectroscopic experiments.
  • Complementary analysis: Serves as a complementary method to global and target analysis for interpreting complex ultrafast spectroscopic data.

Methodology:

Implements lifetime density analysis on a semi-continuous grid of 100 lifetimes, compares LDA outputs with global and target analysis, and applies statistical regularization to noisy data; implemented in Python 2.7.

Topics

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
workflow
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
6/26/2018
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Dorlhiac GF, Fare C, van Thor JJ. PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data. PLOS Computational Biology. 2017;13(5):e1005528. doi:10.1371/journal.pcbi.1005528. PMID:28531219. PMCID:PMC5460884.

PMID: 28531219
PMCID: PMC5460884
Funding: - Leverhulme Trust: RPG-2014-126 - Engineering and Physical Sciences Research Council: EP/M000192/1

Documentation

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