QCloud2
QCloud2 performs automated quality control, processing, and archival of mass-spectrometry-based proteomics data to enable scalable, reproducible instrument evaluation across targeted and untargeted workflows and vendor file formats.
Key Features:
- Automated Data Processing and Archiving: Automates processing and archival of raw and processed mass-spectrometry proteomics data to support routine instrument evaluation.
- Daily Quality Assessments: Provides daily quality-control assessments for mass-spectrometry-based proteomics laboratories to monitor instrument performance.
- Scalability and Reproducibility Enhancements: Implements improvements to handle larger datasets and to produce reproducible quality-control metrics across different laboratory settings.
- Programmatic Access: Exposes programmatic interfaces for integration with external software tools and automated workflows.
- Support for Targeted and Untargeted Workflows and Vendor File Formats: Accepts data from multiple vendors and supports both targeted and untargeted proteomics workflows.
Scientific Applications:
- Routine Instrument Performance Monitoring: Enables continuous monitoring of mass spectrometers to detect performance drift and failures.
- Inter-laboratory Comparison and Benchmarking: Facilitates comparison of quality-control metrics across laboratories for benchmarking and standardization.
- Assessment of Platform Variability: Quantifies variability across instrumental platforms to inform method validation and comparability.
- Biomedical and Translational Proteomics Quality Assurance: Supports consistent data quality for clinical and translational proteomics studies.
Methodology:
Leverages cloud computing to execute automated data processing and archival for mass-spectrometry-based proteomics.
Topics
Details
- Maturity:
- Mature
- Tool Type:
- api, web application
- Programming Languages:
- Groovy, Java, JavaScript
- Added:
- 5/28/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Olivella R, Chiva C, Serret M, Mancera D, Cozzuto L, Hermoso A, Borràs E, Espadas G, Morales J, Pastor O, Solé A, Ponomarenko J, Sabidó E. QCloud2: An Improved Cloud-based Quality-Control System for Mass-Spectrometry-based Proteomics Laboratories. Journal of Proteome Research. 2021;20(4):2010-2013. doi:10.1021/acs.jproteome.0c00853. PMID:33724836.
Chiva C, Olivella R, Borràs E, Espadas G, Pastor O, Solé A, Sabidó E. QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories. PLOS ONE. 2018;13(1):e0189209. doi:10.1371/journal.pone.0189209. PMID:29324744. PMCID:PMC5764250.