QCloud2

QCloud2 performs automated quality control, processing, and archival of mass-spectrometry-based proteomics data to enable scalable, reproducible instrument evaluation across targeted and untargeted workflows and vendor file formats.


Key Features:

  • Automated Data Processing and Archiving: Automates processing and archival of raw and processed mass-spectrometry proteomics data to support routine instrument evaluation.
  • Daily Quality Assessments: Provides daily quality-control assessments for mass-spectrometry-based proteomics laboratories to monitor instrument performance.
  • Scalability and Reproducibility Enhancements: Implements improvements to handle larger datasets and to produce reproducible quality-control metrics across different laboratory settings.
  • Programmatic Access: Exposes programmatic interfaces for integration with external software tools and automated workflows.
  • Support for Targeted and Untargeted Workflows and Vendor File Formats: Accepts data from multiple vendors and supports both targeted and untargeted proteomics workflows.

Scientific Applications:

  • Routine Instrument Performance Monitoring: Enables continuous monitoring of mass spectrometers to detect performance drift and failures.
  • Inter-laboratory Comparison and Benchmarking: Facilitates comparison of quality-control metrics across laboratories for benchmarking and standardization.
  • Assessment of Platform Variability: Quantifies variability across instrumental platforms to inform method validation and comparability.
  • Biomedical and Translational Proteomics Quality Assurance: Supports consistent data quality for clinical and translational proteomics studies.

Methodology:

Leverages cloud computing to execute automated data processing and archival for mass-spectrometry-based proteomics.

Topics

Details

Maturity:
Mature
Tool Type:
api, web application
Programming Languages:
Groovy, Java, JavaScript
Added:
5/28/2021
Last Updated:
11/24/2024

Operations

Publications

Olivella R, Chiva C, Serret M, Mancera D, Cozzuto L, Hermoso A, Borràs E, Espadas G, Morales J, Pastor O, Solé A, Ponomarenko J, Sabidó E. QCloud2: An Improved Cloud-based Quality-Control System for Mass-Spectrometry-based Proteomics Laboratories. Journal of Proteome Research. 2021;20(4):2010-2013. doi:10.1021/acs.jproteome.0c00853. PMID:33724836.

PMID: 33724836
Funding: - Horizon 2020 Framework Programme: 823839

Chiva C, Olivella R, Borràs E, Espadas G, Pastor O, Solé A, Sabidó E. QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories. PLOS ONE. 2018;13(1):e0189209. doi:10.1371/journal.pone.0189209. PMID:29324744. PMCID:PMC5764250.

PMID: 29324744
PMCID: PMC5764250
Funding: - Instituto de Salud Carlos III (ES): PT13/0001 - Secretaría de Estado de Investigación, Desarrollo e Innovación: SEV-2012-0208 - Agència de Gestió d’Ajuts Universitaris i de Recerca: 2014SGR678

Documentation

Installation instructions
https://github.com/proteomicsunitcrg/qcloud2-pipeline/tree/local#readme
How to install QCloud local version
API documentation
https://documenter.getpostman.com/view/8947947/SVn3qu8K
QCloud API documentation

Links

Repository
https://github.com/proteomicsunitcrg/qcloud2-pipeline
(QCloud pipeline repository)
Repository
https://github.com/proteomicsunitcrg/qcloud2-pipeline/tree/local
(For installing QCloud in a local computer)