QSMxT
QSMxT implements end-to-end processing and analysis of Quantitative Susceptibility Mapping (QSM) data derived from gradient-echo phase imaging to improve the accuracy and reliability of susceptibility estimations.
Key Features:
- Robust Masking Technique: Automatically differentiates reliable and less reliable phase regions to delineate areas with dependable phase signals for susceptibility estimation.
- Two-Pass Reconstruction Procedure: Processes separated sources independently in a two-pass reconstruction and combines them to extract additional information while minimizing artefacts from unreliable phase regions and high dynamic range susceptibility sources.
- Artefact Reduction: Reduces streaking artefacts caused by unreliable phase signals, preserving enhanced anatomical detail.
- Minimal Parameter Tuning and Anatomical Priors: Operates without reliance on extensive parameter tuning or anatomical priors.
Scientific Applications:
- 3 Tesla datasets: Validated on 3 Tesla (T) acquisitions including healthy volunteers and phantoms.
- 7 Tesla tumor imaging: Applied to 7 T datasets from tumor patients.
- Simulated data benchmarking: Validated using the QSM challenge 2.0 simulated brain dataset.
- Brain susceptibility studies: Applicable to research requiring precise susceptibility mapping and reduced artefacts in brain imaging.
Methodology:
Applies advanced masking techniques to separate reliable and less reliable phase regions, then performs a two-pass reconstruction that processes separated sources independently before combining them.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- workflow
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python, Shell
- Added:
- 11/29/2021
- Last Updated:
- 11/29/2021
Operations
Publications
Stewart AW, Robinson SD, O’Brien K, Jin J, Widhalm G, Hangel G, Walls A, Goodwin J, Eckstein K, Tourell M, Morgan C, Narayanan A, Barth M, Bollmann S. QSMxT: Robust Masking and Artefact Reduction for Quantitative Susceptibility Mapping. Unknown Journal. 2021. doi:10.1101/2021.05.05.442850.