quac

QuaC is a snakemake-based pipeline that runs several QC tools for WGS/WES samples and then summarizes their results using pre-defined, configurable QC thresholds.

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Topics

Sequence analysis

Collections

Sequencing

Details

License:: GPL-3.0
Maturity:: Mature
Cost:: Free of charge
Tool Type:: command-line tool
Programming Languages:: Python
Added:: 3/26/2026
Last Updated:: 3/28/2026

Operations

Sequencing quality control

Publications

DOI: 10.21105/joss.05313

Documentation

General

https://quac.readthedocs.io/

Downloads

Source code
Version: 2.0
https://github.com/uab-cgds-worthey/quac/releases/tag/2.0

Links

Repository

https://github.com/uab-cgds-worthey/quac

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