quaqc

quaqc performs efficient and quick ATAC-seq quality control and read filtering of NGS data with minimal processing time and extremely low memory overhead.

Key Features:

• ATAC-seq-specific quality control: Performs quality control tailored to ATAC-seq data characteristics.
• Read filtering: Filters NGS reads as part of the ATAC-seq analysis workflow.
• Scalable processing: Processes individual samples on personal laptops or handles thousands of samples in parallel on compute clusters via efficient scaling implementation.
• Low resource requirements: Operates with minimal processing time and extremely low memory overhead.

Scientific Applications:

• ATAC-seq data analysis: Quality control and read filtering for ATAC-seq experiments.
• Large-scale NGS studies: Parallel processing of thousands of samples on compute clusters.

Methodology:

quaqc is implemented in C and has been tested on both macOS and Linux.