QUEEN
QUEEN evaluates the informational content of experimental Nuclear Magnetic Resonance (NMR) restraints to quantify structural information relevant to biomolecular structure determination.
Key Features:
- Quantitative Information Assessment: Evaluates the informational content of experimental NMR restraints and provides measures that correlate with positional uncertainty of the NMR ensemble.
- Redundancy-Insensitive Measurement: Uses an information metric that is not influenced by redundancy within experimental restraints to represent unique structural information.
- Identification of Crucial Restraints: Identifies restraints that are significant and unique for structure determination to highlight the most informative data points.
- Enhanced Redundancy Detection: Detects a broader range of redundancies within experimental datasets compared to existing methods to refine datasets for structural analysis.
Scientific Applications:
- NMR-based Structure Determination: Quantifies restraint information to support biomolecular structure determination from NMR data.
- NOE and Restraint Evaluation: Provides quantitative evaluation of NOE data and other experimental restraints to assess their contribution to structural models.
- Experimental Design Optimization: Highlights which restraints most significantly reduce positional uncertainty to guide optimization of NMR experiments.
Methodology:
QUEEN combines distance-space descriptions with information-theory concepts to objectively quantify the informational content of experimental NMR restraints independent of redundancy effects.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux
- Programming Languages:
- Python
- Added:
- 12/18/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Nabuurs SB, Spronk CAEM, Krieger E, Maassen H, Vriend G, Vuister GW. Quantitative Evaluation of Experimental NMR Restraints. Journal of the American Chemical Society. 2003;125(39):12026-12034. doi:10.1021/ja035440f. PMID:14505424.
DOI: 10.1021/ja035440f
PMID: 14505424
Documentation
User manual
http://www.cmbi.ru.nl/software/queen/