QUEEN

QUEEN evaluates the informational content of experimental Nuclear Magnetic Resonance (NMR) restraints to quantify structural information relevant to biomolecular structure determination.


Key Features:

  • Quantitative Information Assessment: Evaluates the informational content of experimental NMR restraints and provides measures that correlate with positional uncertainty of the NMR ensemble.
  • Redundancy-Insensitive Measurement: Uses an information metric that is not influenced by redundancy within experimental restraints to represent unique structural information.
  • Identification of Crucial Restraints: Identifies restraints that are significant and unique for structure determination to highlight the most informative data points.
  • Enhanced Redundancy Detection: Detects a broader range of redundancies within experimental datasets compared to existing methods to refine datasets for structural analysis.

Scientific Applications:

  • NMR-based Structure Determination: Quantifies restraint information to support biomolecular structure determination from NMR data.
  • NOE and Restraint Evaluation: Provides quantitative evaluation of NOE data and other experimental restraints to assess their contribution to structural models.
  • Experimental Design Optimization: Highlights which restraints most significantly reduce positional uncertainty to guide optimization of NMR experiments.

Methodology:

QUEEN combines distance-space descriptions with information-theory concepts to objectively quantify the informational content of experimental NMR restraints independent of redundancy effects.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux
Programming Languages:
Python
Added:
12/18/2017
Last Updated:
11/25/2024

Operations

Publications

Nabuurs SB, Spronk CAEM, Krieger E, Maassen H, Vriend G, Vuister GW. Quantitative Evaluation of Experimental NMR Restraints. Journal of the American Chemical Society. 2003;125(39):12026-12034. doi:10.1021/ja035440f. PMID:14505424.

Documentation

Links