RAPTOR

RAPTOR intelligently recommends and benchmarks RNA-seq pipelines by analyzing 20+ data characteristics (biological variation, depth, zero-inflation, sample size). Multi-criteria scoring provides personalized pipeline recommendations from eight production-ready workflows (STAR-RSEM-DESeq2, Salmon-edgeR, Kallisto-Sleuth, etc.) in 30 seconds with clear reasoning. Comprehensive benchmarking quantifies accuracy, efficiency, and reproducibility metrics across all pipelines on user data with customizable priority modes.