RAREMETAL
RAREMETAL performs meta-analysis of rare genetic variants to detect associations by combining single-variant and burden tests and supporting analyses of related and unrelated individuals including conditional association analyses.
Key Features:
- Versatile Input Handling: Accommodates various file formats for integration across different study datasets.
- Support for Related and Unrelated Individuals: Analyzes datasets containing both related and unrelated individuals to account for diverse population structures.
- Single Variant and Burden Tests: Performs single-variant association tests and aggregates rare variants within genes or regions for burden testing.
- Conditional Association Analyses: Performs conditional analyses to identify independent genetic signals by conditioning on known associations.
- Meta-Analysis Capability: Combines data from multiple studies to increase statistical power for detecting rare variant associations.
Scientific Applications:
- Complex Disease Genetics: Investigates the contribution of rare genetic variation to complex disease etiology and aids identification of genetic markers through meta-analysis.
Methodology:
Integrates data from individual studies into a unified framework and leverages meta-analysis to uncover associations missed in smaller datasets, with reported rapid computational efficiency.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Shell, C++, Fortran, C
- Added:
- 8/3/2017
- Last Updated:
- 11/24/2024
Operations
Publications
Feng S, Liu D, Zhan X, Wing MK, Abecasis GR. RAREMETAL: fast and powerful meta-analysis for rare variants. Bioinformatics. 2014;30(19):2828-2829. doi:10.1093/bioinformatics/btu367. PMID:24894501. PMCID:PMC4173011.