RAREMETAL

RAREMETAL performs meta-analysis of rare genetic variants to detect associations by combining single-variant and burden tests and supporting analyses of related and unrelated individuals including conditional association analyses.


Key Features:

  • Versatile Input Handling: Accommodates various file formats for integration across different study datasets.
  • Support for Related and Unrelated Individuals: Analyzes datasets containing both related and unrelated individuals to account for diverse population structures.
  • Single Variant and Burden Tests: Performs single-variant association tests and aggregates rare variants within genes or regions for burden testing.
  • Conditional Association Analyses: Performs conditional analyses to identify independent genetic signals by conditioning on known associations.
  • Meta-Analysis Capability: Combines data from multiple studies to increase statistical power for detecting rare variant associations.

Scientific Applications:

  • Complex Disease Genetics: Investigates the contribution of rare genetic variation to complex disease etiology and aids identification of genetic markers through meta-analysis.

Methodology:

Integrates data from individual studies into a unified framework and leverages meta-analysis to uncover associations missed in smaller datasets, with reported rapid computational efficiency.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Shell, C++, Fortran, C
Added:
8/3/2017
Last Updated:
11/24/2024

Operations

Publications

Feng S, Liu D, Zhan X, Wing MK, Abecasis GR. RAREMETAL: fast and powerful meta-analysis for rare variants. Bioinformatics. 2014;30(19):2828-2829. doi:10.1093/bioinformatics/btu367. PMID:24894501. PMCID:PMC4173011.

Documentation

Links