RAscore

RAscore predicts retrosynthetic accessibility of small molecules by classifying whether AiZynthFinder can identify a synthetic route.


Key Features:

  • Binary Classification: RAscore outputs a binary score (1 or 0) indicating whether AiZynthFinder can find a synthetic route for a target molecule.
  • Machine Learning Models: Models are trained to replicate AiZynthFinder predictions and produce retrosynthetic accessibility assessments (RAscores).
  • Speed and Efficiency: RAscore computes retrosynthetic accessibility scores approximately 4,500 times faster than running retrosynthetic searches directly with AiZynthFinder.
  • Integration with Virtual Screening Workflows: RAscore can pre-screen millions of virtual molecules from enumerated or generative models to prioritize compounds with feasible synthetic routes for downstream virtual screening.

Scientific Applications:

  • Drug Discovery: Rapidly assess synthesizability to prioritize candidate molecules during early-stage drug discovery and optimize resource allocation.
  • Chemical Biology and Library Design: Filter and curate large virtual libraries to build databases enriched for compounds with practical synthetic routes for biological screening.

Methodology:

Machine learning models trained on AiZynthFinder predictions classify whether a synthetic route can be identified and output a binary retrosynthetic accessibility score (RAscore).

Topics

Details

License:
MIT
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
2/3/2021

Operations

Publications

Thakkar A, Chadimova V, Bjerrum EJ, Engkvist O, Reymond J. Retrosynthetic Accessibility Score (RAscore) - Rapid Machine Learned Synthesizability Classification from AI Driven Retrosynthetic Planning. Unknown Journal. 2020. doi:10.26434/chemrxiv.13019993.v1.

Funding: - European Commission: 676434