rasterdiv

rasterdiv computes Information Theory–based diversity indices from remotely sensed raster data to quantify spatial patterns of functional, taxonomic, phylogenetic, and genetic biodiversity.


Key Features:

  • Information Theory-Based Indices: Uses principles from Information Theory to compute diversity metrics, including Shannon's entropy and Cumulative Residual Entropy (CRE).
  • Supported Data Types: Operates on RasterLayer objects and numerical matrices derived from remotely sensed data.
  • Remote Sensing Integration: Calculates spatially explicit diversity indices from remotely sensed datasets to estimate biodiversity across large areas.
  • Multi-dimensional Biodiversity Metrics: Quantifies functional diversity (structural, biophysical, biochemical), taxonomic diversity, phylogenetic relationships, and genetic variation.
  • Reproducible Algorithms: Implements algorithms that enable transparent and reproducible diversity calculations.

Scientific Applications:

  • Ecological Monitoring: Enables large-scale assessments of diversity to track changes in biodiversity across time and space.
  • Conservation Planning: Provides spatially explicit diversity information to inform prioritization of areas for protection.
  • Environmental Impact Assessments: Assesses impacts of environmental change or human activities on biodiversity across landscapes.

Methodology:

Computes Information Theory-based diversity metrics, including Shannon's entropy and Cumulative Residual Entropy (CRE), from RasterLayer objects or numerical matrices derived from remotely sensed data.

Topics

Details

Programming Languages:
R
Added:
1/18/2021
Last Updated:
2/3/2021

Operations

Publications

Thouverai E, Marcantonio M, Bacaro G, Da Re D, Iannacito M, Ricotta C, Tattoni C, Vicario S, Rocchini D. Measuring diversity from space: a global view of the free and open source rasterdiv R package under a coding perspective. Unknown Journal. 2020. doi:10.1101/2020.11.14.369371.