rasterdiv
rasterdiv computes Information Theory–based diversity indices from remotely sensed raster data to quantify spatial patterns of functional, taxonomic, phylogenetic, and genetic biodiversity.
Key Features:
- Information Theory-Based Indices: Uses principles from Information Theory to compute diversity metrics, including Shannon's entropy and Cumulative Residual Entropy (CRE).
- Supported Data Types: Operates on RasterLayer objects and numerical matrices derived from remotely sensed data.
- Remote Sensing Integration: Calculates spatially explicit diversity indices from remotely sensed datasets to estimate biodiversity across large areas.
- Multi-dimensional Biodiversity Metrics: Quantifies functional diversity (structural, biophysical, biochemical), taxonomic diversity, phylogenetic relationships, and genetic variation.
- Reproducible Algorithms: Implements algorithms that enable transparent and reproducible diversity calculations.
Scientific Applications:
- Ecological Monitoring: Enables large-scale assessments of diversity to track changes in biodiversity across time and space.
- Conservation Planning: Provides spatially explicit diversity information to inform prioritization of areas for protection.
- Environmental Impact Assessments: Assesses impacts of environmental change or human activities on biodiversity across landscapes.
Methodology:
Computes Information Theory-based diversity metrics, including Shannon's entropy and Cumulative Residual Entropy (CRE), from RasterLayer objects or numerical matrices derived from remotely sensed data.
Topics
Details
- Programming Languages:
- R
- Added:
- 1/18/2021
- Last Updated:
- 2/3/2021
Operations
Publications
Thouverai E, Marcantonio M, Bacaro G, Da Re D, Iannacito M, Ricotta C, Tattoni C, Vicario S, Rocchini D. Measuring diversity from space: a global view of the free and open source rasterdiv R package under a coding perspective. Unknown Journal. 2020. doi:10.1101/2020.11.14.369371.