RCASPAR

RCASPAR implements a piecewise baseline hazard Cox regression model with an Lq-norm prior to perform variable selection and predict survival times from high-dimensional explanatory covariates in genomics and molecular biology datasets.


Key Features:

  • Piecewise Baseline Hazard Cox Regression Model: Implements a Cox regression model with a piecewise baseline hazard to model complex time-to-event hazard structures.
  • Lq-Norm Based Prior: Uses an Lq-norm prior for shrinkage and selection of regression coefficients to identify relevant covariates.
  • High-Dimensional Data Handling: Targets analysis of datasets with numerous explanatory covariates typical of genomic and molecular biology studies.

Scientific Applications:

  • Survival Analysis: Prediction and modeling of survival times and other time-to-event outcomes using high-dimensional covariates.
  • Genomics and Molecular Biology: Analysis of high-throughput genomic and molecular datasets where variable selection and survival modeling are required.

Methodology:

Computational methods explicitly include a piecewise baseline hazard Cox regression model and an Lq-norm based prior for selection of regression coefficients applied to high-dimensional explanatory covariates.

Topics

Collections

Details

License:
GPL-3.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Gene expression analysis

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

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