Rdisop
Rdisop determines sum formulas of unknown metabolites from measured isotope patterns obtained by high-resolution mass spectrometry to support metabolite identification.
Key Features:
- High Precision Mass Spectrometry Integration: Analyzes isotope patterns measured by high-resolution mass spectrometry to inform formula determination.
- Sum Formula Determination: Matches measured isotope patterns with theoretical isotopic distributions to determine candidate sum formulas.
- Computational Efficiency: Employs a computationally efficient algorithm to process high-resolution MS data and identify sum formulas.
- High Accuracy in Identification: Demonstrates over 90% accuracy for molecules up to 1000 Da using orthogonal time-of-flight mass spectrometry.
Scientific Applications:
- Metabolomics: Facilitates comprehensive analysis and characterization of metabolic pathways through accurate sum formula assignment.
- Biomarker Discovery: Aids identification of potential biomarkers by providing precise molecular formula information.
- Drug Development: Supports identification of drug-related metabolites and characterization of pharmacokinetic profiles via formula determination.
Methodology:
Compares measured natural isotope distributions from high-resolution MS against theoretical isotope distributions generated for candidate sum formulas and ranks candidates by goodness of fit.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 5/9/2021
Operations
Publications
Böcker S, Letzel MC, Lipták Z, Pervukhin A. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 2008;25(2):218-224. doi:10.1093/bioinformatics/btn603. PMID:19015140. PMCID:PMC2639009.
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Relation: uses