Rdisop

Rdisop determines sum formulas of unknown metabolites from measured isotope patterns obtained by high-resolution mass spectrometry to support metabolite identification.


Key Features:

  • High Precision Mass Spectrometry Integration: Analyzes isotope patterns measured by high-resolution mass spectrometry to inform formula determination.
  • Sum Formula Determination: Matches measured isotope patterns with theoretical isotopic distributions to determine candidate sum formulas.
  • Computational Efficiency: Employs a computationally efficient algorithm to process high-resolution MS data and identify sum formulas.
  • High Accuracy in Identification: Demonstrates over 90% accuracy for molecules up to 1000 Da using orthogonal time-of-flight mass spectrometry.

Scientific Applications:

  • Metabolomics: Facilitates comprehensive analysis and characterization of metabolic pathways through accurate sum formula assignment.
  • Biomarker Discovery: Aids identification of potential biomarkers by providing precise molecular formula information.
  • Drug Development: Supports identification of drug-related metabolites and characterization of pharmacokinetic profiles via formula determination.

Methodology:

Compares measured natural isotope distributions from high-resolution MS against theoretical isotope distributions generated for candidate sum formulas and ranks candidates by goodness of fit.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
5/9/2021

Operations

Publications

Böcker S, Letzel MC, Lipták Z, Pervukhin A. SIRIUS: decomposing isotope patterns for metabolite identification. Bioinformatics. 2008;25(2):218-224. doi:10.1093/bioinformatics/btn603. PMID:19015140. PMCID:PMC2639009.

Documentation

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Related Tools

R
Relation: uses