RDMP

RDMP manages and curates longitudinal healthcare and clinical datasets to produce reproducible, updateable datasets for defined research cohorts.


Key Features:

  • Data Management: Facilitates loading, managing, cleaning, and curating longitudinal healthcare datasets and produces reproducible, updateable datasets for defined research cohorts.
  • Efficiency and Productivity: Increased data releases per month from 7.1 to 25.3 and reduced error rate from 12.7% to 3.1% between 2013 and 2017.
  • Time Efficiency: Reduced data management time per release from an average of 24.6 hours to 3.0 hours.
  • Reduced Waiting Time: Researchers receive datasets in under one week after agreeing specifications compared with approximately six months previously.
  • Scalability and Capacity: Manages 163 datasets, produced 1,321 data extracts, and supports extracts integrating up to 70 distinct datasets.

Scientific Applications:

  • Data cleaning and transformation: Enables reproducible cleaning, transformation, summarization, and quality assessment of routine healthcare data.
  • Cohort generation: Produces anonymized, updateable research cohorts derived from routine clinical datasets to support answering research questions.

Methodology:

Implements a structured process for handling clinical datasets that preserves provenance and provides transparent, systematic data provision.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux, Mac
Programming Languages:
Ruby, C++
Added:
7/12/2018
Last Updated:
12/10/2018

Operations

Publications

Nind T, Galloway J, McAllister G, Scobbie D, Bonney W, Hall C, Tramma L, Reel P, Groves M, Appleby P, Doney A, Guthrie B, Jefferson E. The research data management platform (RDMP): A novel, process driven, open-source tool for the management of longitudinal cohorts of clinical data. GigaScience. 2018;7(7). doi:10.1093/gigascience/giy060. PMID:29790950. PMCID:PMC6041881.

Funding: - Medical Research Council: MR/M501633/1 - Wellcome Trust: WT086113 - European Union's Horizon 2020 research and innovation programme: 633 983

Documentation