recetox-aplcms

recetox-aplcms is a tool for peak detection in mass spectrometry data. The tool performs (1) noise removal, (2) peak detection, (3) retention time drift correction, (4) peak alignment and (5) weaker signal recovery as well as (6) suspect screening.

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Topics

Metabolomics

Details

License:: GPL-2.0
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: api, library
Operating Systems:: Linux, Mac
Programming Languages:: R
Added:: 6/16/2023
Last Updated:: 11/4/2025

Operations

Data Inputs & Outputs

Alignment

Inputs

Mass spectrometry data
- mzML

Outputs

Downloads

Software package
https://bioconda.github.io/recipes/r-recetox-aplcms/README.html
Source code
https://github.com/RECETOX/recetox-aplcms
Tool wrapper (Galaxy)
https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms

Links

Galaxy service

https://umsa.cerit-sc.cz/root?tool_id=toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_generate_feature_table/recetox_aplcms_generate_feature_table/0.11.0+galaxy1

Repository

https://github.com/RECETOX/recetox-aplcms

Related Tools

aplcms

Relation: isNewVersionOf

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