ReMeDy

Remedy: Ontology-Validated Stem Cell Project Data Integration Platform

Remedy integrates heterogeneous datasets from stem cell projects, including stem cell product characterization, research subject information, and project outcomes, into a validated and harmonized relational database organized by project.


Key Features:

  • Comprehensive Data Integration: Aggregates and validates heterogeneous stem cell datasets using predefined ontologies to ensure consistency and data quality.
  • Relational Database Storage: Stores validated data in a relational database to harmonize diverse common data elements and enable structured access and management.
  • Project-Based Framework: Organizes data by individual stem cell projects, supporting structured tracking and analysis of clinical, preclinical, and in-vitro studies.

Scientific Applications:

  • Regenerative Medicine Data Harmonization: Aggregates and standardizes data from 51 published iPSC projects to support comparative analysis and knowledge generation across clinical, preclinical, and in-vitro evaluations.

Methodology:

Heterogeneous stem cell datasets are validated using predefined ontologies and harmonized into standardized common data elements. Validated data are stored in a relational database structured by project, enabling consistent integration, retrieval, and analysis across multiple iPSC studies.

Topics

Details

License:
CC-BY-NC-4.0
Cost:
Free of charge
Tool Type:
command-line tool, web application
Operating Systems:
Linux, Mac, Windows
Programming Languages:
JavaScript, Shell, Other
Added:
10/22/2021
Last Updated:
10/22/2021

Operations

Publications

Borziak K, Parvanova I, Finkelstein J. ReMeDy: a platform for integrating and sharing published stem cell research data with a focus on iPSC trials. Database. 2021;2021. doi:10.1093/database/baab038. PMID:34156448. PMCID:PMC8218701.

PMID: 34156448
PMCID: PMC8218701
Funding: - NIH: UL1TR001433 and OT2HL147606

Links