ReMeDy
Remedy: Ontology-Validated Stem Cell Project Data Integration Platform
Remedy integrates heterogeneous datasets from stem cell projects, including stem cell product characterization, research subject information, and project outcomes, into a validated and harmonized relational database organized by project.
Key Features:
- Comprehensive Data Integration: Aggregates and validates heterogeneous stem cell datasets using predefined ontologies to ensure consistency and data quality.
- Relational Database Storage: Stores validated data in a relational database to harmonize diverse common data elements and enable structured access and management.
- Project-Based Framework: Organizes data by individual stem cell projects, supporting structured tracking and analysis of clinical, preclinical, and in-vitro studies.
Scientific Applications:
- Regenerative Medicine Data Harmonization: Aggregates and standardizes data from 51 published iPSC projects to support comparative analysis and knowledge generation across clinical, preclinical, and in-vitro evaluations.
Methodology:
Heterogeneous stem cell datasets are validated using predefined ontologies and harmonized into standardized common data elements. Validated data are stored in a relational database structured by project, enabling consistent integration, retrieval, and analysis across multiple iPSC studies.
Topics
Details
- License:
- CC-BY-NC-4.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool, web application
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- JavaScript, Shell, Other
- Added:
- 10/22/2021
- Last Updated:
- 10/22/2021
Operations
Publications
Borziak K, Parvanova I, Finkelstein J. ReMeDy: a platform for integrating and sharing published stem cell research data with a focus on iPSC trials. Database. 2021;2021. doi:10.1093/database/baab038. PMID:34156448. PMCID:PMC8218701.