removeexonlines
removeexonlines removes lines containing exon sequences from genomic datasets to enable analyses focused on intronic or non-coding regions.
Key Features:
- Exon Line Removal: Filters out lines that contain exon data from genomic files to produce datasets without exonic sequences.
- Galaxy Integration: Operates within the Galaxy framework and is compatible with the Galaxy@Pasteur instance.
- Execution via Galaxy Engine: Runs processes using Galaxy's execution engine on the Institut Pasteur cluster.
- API and Bioblend Communication: Interacts with Galaxy through the Galaxy API or the Bioblend library for task execution.
Scientific Applications:
- Genomic Data Processing: Simplifies datasets by removing exon lines for analyses that target intronic regions or non-coding DNA.
- Custom Workflow Execution: Functions as a component within custom Galaxy@Pasteur workflows to support tailored genomic pipelines.
Methodology:
Runs inside the Galaxy framework using Galaxy's execution engine on the Institut Pasteur cluster and communicates with Galaxy via the Galaxy API or the Bioblend library.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 6/16/2020
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.