renz

renz analyzes enzyme kinetic data that deviate from Michaelis-Menten kinetics and estimates kinetic parameters using multiple fitting and regression approaches.


Key Features:

  • Methodological diversity: renz provides multiple analysis methods categorized by data-fitting approach and data-manipulation requirement.
  • Data fitting approaches: Methods fit either single progress curves (substrate concentration over time) or analyze the dependency of initial rates on substrate concentration via differential rate equations.
  • Data manipulation options: Methods include approaches that transform experimental data to obtain linear functions and approaches that perform direct non-linear regression without such transformations.
  • Error minimization: The package offers analytical options that reduce biases from unweighted regression analyses and incorrect data transformations during kinetic parameter estimation.

Scientific Applications:

  • Enzyme kinetic parameter estimation: Estimation of kinetic parameters from progress-curve and initial-rate datasets, including cases that do not follow Michaelis-Menten kinetics.
  • Biochemistry and pharmacology research: Analysis of enzyme behavior to support experimental design, hypothesis testing, and data interpretation in biochemistry, molecular biology, and pharmacology.

Methodology:

Computational methods explicitly include fitting single progress curves (substrate concentration vs time), analyzing initial-rate dependencies using differential rate equations, applying data linearization transformations, and performing direct non-linear regression.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
8/17/2022
Last Updated:
11/24/2024

Operations

Publications

Aledo JC. renz: An R package for the analysis of enzyme kinetic data. BMC Bioinformatics. 2022;23(1). doi:10.1186/s12859-022-04729-4. PMID:35578161. PMCID:PMC9112463.

Documentation

Links