Restauro-G
Restauro-G re-annotates bacterial genomes using BLAST-like sequence alignment and database integration to generate high-accuracy gene and functional annotations for microbial genomics.
Key Features:
- Bacterial Genome Specialization: Tailored for microbial genomics with 98% accuracy against EMBL-curated annotations.
- BLAST-Like Alignment: Compares sequences against UniProt KB, NCBI nr, COGs, Pfam, and PSORTb databases.
- Automation and Speed: Processes large genome datasets rapidly without sacrificing precision.
- G-language Integration: Built within the G-language Genome Analysis Environment for genomic workflows.
Scientific Applications:
- Genome Re-annotation: Standardizes annotations for comparative studies, evolutionary biology, and functional genomics.
- Gene Discovery: Identifies novel genes, pathways, and microbial diversity insights from bacterial genomes.
Methodology:
Performs BLAST-like sequence alignments comparing queries to UniProt KB, NCBI nr, COGs, Pfam, and PSORTb and runs within the G-language Genome Analysis Environment.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Perl
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Publications
Tamaki S, et al. Restauro-G: a rapid genome re-annotation system for comparative genomics. Genomics Proteomics Bioinformatics. 2007; 5:53-8. doi: 10.1016/S1672-0229(07)60014-X
PMID: 17572364